Author Archives: academickarma

About academickarma

Academic Karma is a universal platform for speeding up and improving peer review: http://academickarma.org

Academic Karma is closing down

Academic Karma was built on the conviction that publishers should not control peer-review.  We believed that the publisher-controlled system of academic peer review results in unreasonably expensive article processing fees (and big profit margins for journals) which is both an unnecessary drain on public funding for science as well as a barrier to publishing for less affluent researchers.  We wanted to replace the notion that academics review “for a journal”, with the notion that academic review papers for the academic community.

As an alternative, we built a universal platform for peer review.   Reviewers could use our platform to review any manuscript, and we would email the link to the review to the author,  editor and journal at the same time.   In order to encourage timely reviews, reviewers earned points for reviews returned within 10 days of acceptance.  Authors (and academic editors) were happy to get comments back quickly,  but we received a lot of push-back from journals with automated review systems, as it meant extra work in inputting the review into these systems.   Reviewers would continue to receive chase up emails for them to submit reviews weeks after submitting them via Academic Karma, and as a result stopped using it.

The increasing popularity of preprints provided a new opportunity to challenge the publisher’s control of peer review.   We re-purposed our platform as a preprint peer-review platform.  Reviewers could use our platform to make their reviews of preprints open (with the option of allowing the author to upload their reply first).   Moreover, authors were able to use Academic Karma to conduct a full open peer-review process outside the journal system.  We also built a system were academics could curate automatically updating list of preprints matching a specific theme.  Similarly, we created a system for curating preprints presented at conferences.

We still believe that it is bad for science that publishers control peer-review, but ultimately we were  unable to make much of an impact.  Innovation around preprints still seems a promising way for scientists to take back some control over co-ordinating peer-review.  If you are interested, we recommend checking out other experiments in peer-review, many of which are listed here  https://reimaginereview.asapbio.org/ . 

You can export all reviews you have written at Academic Karma (see http://academickarma.org/closing).  Thank you  to everyone who contributed reviews.

 

Preprint Journal Club

We are excited to launch our new preprint journal club platform http://preprintjc.org!

Why Preprint Journal Clubs?

Preprint journal clubs are a great way to keep abreast of cutting edge research in your field, and also provide feedback at a stage when it can still be used to improve the manuscript.  In other words:

“For authors, one of the most exciting potential benefits of preprints is the ability to attract early feedback from broad and diverse sources during the preparation of a scientific manuscript. Preprint journal clubs can provide this input – and a more meaningful review experience for their own members as well.”

–  Jessica Polka, http://asapbio.org/preprint-journal-clubs

For more information on the benefits of starting a preprint journal club, along with information and advice on running a journal club. see the ASAPbio Preprint Journal Club page  https://github.com/SamanthaHindle/preprint_JournalClub organised by Daniela Saderi and Samantha Hindle.

How does preprintjc.org support preprint journal clubs?

PreprintJC provides a platform for writing and sharing journal club review of preprints. In particular it facilitates:

  1. creating an online presence for your preprint journal club and listing journal club members;
  2. getting notifications of the latest preprints in your area of research, using our preprint theme pages:  http://preprintjc.org/themes;
  3. collaboratively bookmarking preprints of interest (bookmarks are shared by all members of a journal club);
  4. posting the review comments to the authors;
  5. posting comments publicly (either immediately or after authors have written a response);
  6. authors  posting their response to the review (which is displayed together with the review);
  7. keeping a record of all journal club reviews, e.g. http://preprintjc.org/journalclub/50046nn11678

 

How does it differ from Academic Karma?

PreprintJC.org is built on the same platform as Academic Karma.  Essentially preprintjc.org provides extra functionality to help facilitate journal club preprint peer review, rather than just single-person peer review.

 

Open science agreements between reviewers and authors

For #OAWeek16 we are launching open science agreements.  These are agreements between author and reviewer which are agreed before the reviewer accepts a review invitation from a journal.  We describe why we think open science agreements are needed here.  The rest of this blog is devoted to showing how open science agreements work in practice.
An invited reviewer visits http://academickarma.org/reviewagreement,  where they will find the following form.

screenshot-from-2016-10-26-131910

Why do we need open-science agreements between authors and reviewers

If you are committed to open science, there are fairly limited options for reviewing papers. Basically your only option is to review for journals which support and enforce open science principles. You are then trusting the journal  to make sure the author makes their data and code available, and also publishes the article open access.   Moreover, you are forced to decline to review interesting papers because they are not submitted to a limited number of journals supporting open science, or because the authors couldn’t afford the article processing charge and submitted to a closed-access journal.   This approach provides no feedback mechanisms to the authors of these papers that you would have been happy to review their paper had they committed to making their article, code and data openly accessible to the community.   It provides no incentive to authors to be more open.

We wanted to create an alternative, and this is where the idea of open-science agreements came from.    When you are invited to review a paper, you can visit http://academickarma.org/reviewagreement  to specify (anonymously) what you expect from the authors in terms of openness before you agree to review their paper.   You also specify how open you plan to make your review, and how long you expect it will take you to complete the review.   Rather than asking the authors to pay to publish open-access, the reviewer can ask that both the submitted and revised manuscripts are uploaded to a preprint server.   The authors can suggest modifications and explain if they are  unable to satisfy all of the reviewers expectations.  If an agreement is reached , then the reviewer can review the paper with the knowledge that their free labour is supporting resources (code, data, manuscript)  which can be re-used by everyone.

More information on how open science agreements work is provided here.

Reviewer-author contracts as a way to encourage openness in scientific publishing

In preparation for open access week, we are asking for feedback on our new initiative: Reviewer-Author contracts.

Background:

Academics review manuscripts for free  in order for publishing companies to make billions by charging readers to the access the work.   We think that a viable alternative is for scientists to only agree to review manuscripts which are first deposited in preprint servers, and to make the content of their review openly available alongside the preprint.    Reviewer agreements are a way to give the reviewer a bit more influence over the openness (open access, open code, open data)  of papers they choose to review, or at least a way for them to chose to only review papers which are following open practices.

How does it work:

1. Reviewer receives an invitation from a journal to review a paper.
2. Invited reviewer fills in the form at http://academickarma.org/reviewagreement, specifying their conditions for agreeing to review the paper.
3. Academic Karma sends an email to the paper author informing them of the conditions requested by the anonymous invited reviewer.
4. The author can either agree, decline, or modify the agreement.
5. If the agreement is modified, an email sent to the invited reviewer, who can either agree, decline, or modify the agreement
6.  3-5 repeated until an agreement reached, or either invited reviewer or author declines.
7. Once an agreement is reached, the  reviewer agrees with the journal to review the paper.
8. The author posts the preprint.
9. The reviewer reviews posts as a comment on Biorxiv preprint page, or if they want to remain anonymous, they  post the review on the Academic Karma review page and we post their comment for them (possibly  after a specified ’embargo’ to give the authors a chance to respond first).
10. The review is sent to the journal editor.
11. The author modifies the paper, re-uploads to a preprint server, and posts their response to the review

What is currently included in the review agreement:

1. Option to ask author to post preprint.
2. Option to ask author to agree to post a revised preprint.
3. Option to ask author to make data openly available.
4. Option to ask author to make source code openly available.

So that the expectations are not just on the author’s side, the reviewer can also choose to  commit to

1. The maximum time they will take for the review.
2. Whether they will agree to review a revised manuscript.
3. Whether they would be willing for their review to be transferred to another journal.
4.  How long of an embargo period before the content of their review is posted.

These ‘contracts’ are not binding in any legal sense of course.  However, a permanent record is kept so that both reviewer and author can refer to what they agreed to.
We welcome any feedback on what extra conditions we might want to include, as well as what extra optional commitments reviewers might like to make.

Scientists who open-review preprints

Peer review is controlled by publishers who generate billions in profits from free labour. What are your options if you do not want to provide free labour to be exploited by publishers, but still  want to contribute to peer review?

  1. Demand payment for peer review either to yourself, or for your department, or perhaps a contribution to a worthy cause
  2. Refuse to review for certain publishers
  3. Open review preprints

The problem with 1. is that publishers will pass that cost onto authors. A good example of Option 2 is The Cost of Knowledge boycott of Elsevier.

What about option 3?

The idea is that you only agree to review manuscripts if they are also posted as preprints, and that you publish your reviews openly online and send the link to the journal editor.  The authors can respond to your reviews openly, independently of the review process in any particular journal. The journal can still use your reviews of course, but then again so can anyone else.  Instead of doing free work for a publisher, you have instead contributed a common good from which everyone can benefit .

There is already a  group of pioneers in this space who are already posting open preprint peer review.  These scientists have between them written 61 open reviews of 51 preprints.  Undoubtedly there are many more examples (e.g. in blog posts) which have not collected here – please point us to these so that we can index them.

Not everyone is comfortable posting non-anonymous open peer review. We have created a platform where you can post content-open preprint peer review anonymously or non-anonymously. You can review any arXiv, bioRxiv, PeerJ, SSRN preprint, or even papers deposited in several institutional repositories.   If you are worried your review is overly critical and might be damaging to the authors, you can also set an ’embargo’ period to give the authors a chance to respond before the review is made open.

So here’s to those scientists who are showing us that there is a way to contribute to peer review without providing free labour to be exploited by publishers.

 

Prize for most endorsed review of #SMBE16 preprint

One of the goals of Academic Karma is to separate peer-review from publication in a particular journal.  One of the most promising ways of doing this is by the community shifting to content-open review of preprints.

In order to try to encourage this, we are putting up a $200USD prize for the most endorsed review of a preprint presented at SMBE16.

Here is a primer on how to use Academic Karma to do preprint peer review, and how to endorse preprint reviews.  Here  is a list of preprints presented at SMBE16.

The competition will run until the end of July.